RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: tmRNA Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 726 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] TMR_00287 Lact.gass._TRW-1596_1-366 tmRNA Unknown tmRNA Database Lact.gass._TRW-1596_1-366 366 TMR_00288 Lact.helv._AF375575_1-367 tmRNA Unknown tmRNA Database Lact.helv._AF375575_1-367 367 TMR_00289 Lact.john._TRW-257314_1-367 tmRNA Unknown tmRNA Database Lact.john._TRW-257314_1-367 367 TMR_00290 Lact.lact._AE006373_1-359 tmRNA Unknown tmRNA Database Lact.lact._AE006373_1-359 359 TMR_00291 Lact.lact._AF176556_1-359 tmRNA Unknown tmRNA Database Lact.lact._AF176556_1-359 359 TMR_00292 Lact.lact._AF375552_1-359 tmRNA Unknown tmRNA Database Lact.lact._AF375552_1-359 359 TMR_00293 Lact.lact._AF375554_1-359 tmRNA Unknown tmRNA Database Lact.lact._AF375554_1-359 359 TMR_00294 Lact.plan._AF375567_1-353 tmRNA Unknown tmRNA Database Lact.plan._AF375567_1-353 353 TMR_00295 Lact.plan._AF375576_1-371 tmRNA Unknown tmRNA Database Lact.plan._AF375576_1-371 371 TMR_00296 Lact.plan._AL935259_1-372 tmRNA Unknown tmRNA Database Lact.plan._AL935259_1-372 372

Analyse the 726 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 726 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 726 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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