RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00359
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00359
Molecule name [?]:RNase P RNA, Wastewater SL2D
Source [?]:RNase P Database
Source ID [?]:Wastewater SL2D
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:293
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:133
Number of paired bases [?]:160

Click on any header below for additional features.

Stem features

Number of stems [?]:12
Number of base pairs in stems [?]:57
Maximum length of a stem [?]:8
Average length of a stem [?]:4.75
Minimum length of a stem [?]:2
Maximum estimated free energy [?]:-1.5
Average estimated free energy [?]:-7.83
Minimum estimated free energy [?]:-18

Hairpin loop features

Number of hairpin loops [?]:4
Maximum number of free bases in hairpin loops [?]:11
Average number of free bases in hairpin loops [?]:5.75
Minimum number of free bases in hairpin loop [?]:4
Total number of UUCG hairpin motifs per molecule [?]:1

Bulge loop features
Number of bulge loops [?]:3
Maximum number of free bases in bulge loops [?]:28
Average number of free bases in bulge loops [?]:5.17
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:3
Maximum number of free bases in internal loops:12
Average number of free bases in internal loops:7.5
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:4
Average internal loop absolute asymmetry:2.33
Minimum internal loop absolute asymmetry:1
Maximum internal loop relative asymmetry:3
Average internal loop relative asymmetry:1.67
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:2
Maximum number of free bases in multi-loops:4
Average number of free bases in multi-loops:1.14
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:3
Average multi-loop absolute asymmetry:1
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:0.81
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.5
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 3
Total number of AG non-canonical base pairs:1
Total number of CC non-canonical base pairs:1
Total number of GG non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:3
Number of base pairs in bands:23
Maximum band length:12
Average band length:7.67
Minimum band length:4
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:3
Minimum number of bands per pseudoknot:3
Maximum number of un-bands:1
Average number of un-bands:1
Minimum number of un-bands:1
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:20
Average number of unpaired bases:20
Minimum number of unpaired bases:20
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:7
Maximum number of base pairs to remove, per pseudoknot:7
Average number of base pairs to remove, per pseudoknot:7
Minimum number of base pairs to remove, per pseudoknot:7
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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