RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule ASE_00379
(click to expand/contract all tables)

Format:
Molecule ID [?]:ASE_00379
Molecule name [?]:RNase P RNA, Salt Marsh A20(33)
Source [?]:RNase P Database
Source ID [?]:Salt Marsh A20(33)
Reference [?]:James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314.
Type [?]:Ribonuclease P RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:No
Method for secondary structure determination [?]:Comparative sequence analysis
Number of molecules [?]:1
Length [?]:304
Fragments used [?]:Yes
Duplicated sequence [?]:No other molecule in the database has the same sequence
Number of domains [?]:1
Number of unpaired bases [?]:126
Number of paired bases [?]:178

Click on any header below for additional features.

Stem features

Number of stems [?]:16
Number of base pairs in stems [?]:66
Maximum length of a stem [?]:8
Average length of a stem [?]:4.12
Minimum length of a stem [?]:1
Maximum estimated free energy [?]:0
Average estimated free energy [?]:-6.87
Minimum estimated free energy [?]:-14.9

Hairpin loop features

Number of hairpin loops [?]:6
Maximum number of free bases in hairpin loops [?]:7
Average number of free bases in hairpin loops [?]:4.83
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:6
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:0.83
Minimum number of free bases in bulge loop [?]:0

Internal loop features
Number of internal loops [?]:1
Maximum number of free bases in internal loops:1
Average number of free bases in internal loops:1
Minimum number of free bases in internal loop:1
Maximum internal loop absolute asymmetry:0
Average internal loop absolute asymmetry:0
Minimum internal loop absolute asymmetry:0
Maximum internal loop relative asymmetry:1
Average internal loop relative asymmetry:1
Minimum internal loop relative asymmetry:1

Multi-loop features
Number of multi-loops [?]:3
Maximum number of free bases in multi-loops:27
Average number of free bases in multi-loops:5.09
Minimum number of free bases in multi-loop:0
Maximum multi-loop absolute asymmetry:27
Average multi-loop absolute asymmetry:8.22
Minimum multi-loop absolute asymmetry:0
Maximum multi-loop relative asymmetry:4
Average multi-loop relative asymmetry:0.69
Minimum multi-loop relative asymmetry:0
Maximum number of branches in multi-loops:4
Average number of branches in multi-loops:3.67
Minimum number of branches in multi-loops:3

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 6
Total number of AA non-canonical base pairs:1
Total number of AC non-canonical base pairs:1
Total number of AG non-canonical base pairs:2
Total number of CU non-canonical base pairs:1
Total number of UU non-canonical base pairs:1

Pseudoknot features
Number of pseudoknots [?]:1
Number of bands:3
Number of base pairs in bands:23
Maximum band length:15
Average band length:7.67
Minimum band length:4
Maximum number of bands per pseudoknot:3
Average number of bands per pseudoknot:3
Minimum number of bands per pseudoknot:3
Maximum number of un-bands:1
Average number of un-bands:1
Minimum number of un-bands:1
Maximum number of in-bands:0
Average number of in-bands:0
Minimum number of in-bands:0
Maximum number of unpaired bases:22
Average number of unpaired bases:22
Minimum number of unpaired bases:22
Several ways to remove minimum number of base pairs, per molecule:No
Minimum number of base pairs to remove, per molecule:4
Maximum number of base pairs to remove, per pseudoknot:4
Average number of base pairs to remove, per pseudoknot:4
Minimum number of base pairs to remove, per pseudoknot:4
Minimum number of bands to remove, per molecule:1
Maximum number of bands to remove, per pseudoknot:1
Average number of bands to remove, per pseudoknot:1
Minimum number of bands to remove, per pseudoknot:1



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