RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00443 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00443 Molecule name [?]: RNase P RNA, Wickerhamia fluorescens, strain NRRL Y-4819 Source [?]: RNase P Database Source ID [?]: Wickerhamia fluorescens, strain NRRL Y-4819 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 232 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 132 Number of paired bases [?]: 100

Click on any header below for additional features.

Stem features Number of stems [?]: 8 Number of base pairs in stems [?]: 50 Maximum length of a stem [?]: 8 Average length of a stem [?]: 6.25 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -3.5 Average estimated free energy [?]: -12.11 Minimum estimated free energy [?]: -17.5

Hairpin loop features Number of hairpin loops [?]: 5 Maximum number of free bases in hairpin loops [?]: 9 Average number of free bases in hairpin loops [?]: 4.6 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 1 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 1 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 12 Average number of free bases in internal loops: 10 Minimum number of free bases in internal loop: 8 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 4 Minimum internal loop absolute asymmetry: 4 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 1 Maximum number of free bases in multi-loops: 52 Average number of free bases in multi-loops: 13.75 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 52 Average multi-loop absolute asymmetry: 26.17 Minimum multi-loop absolute asymmetry: 1 Maximum multi-loop relative asymmetry: 52 Average multi-loop relative asymmetry: 8.95 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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