RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00454 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00454 Molecule name [?]: RNase P RNA, Zygosaccharomyces rouxii, strain NRRL Y-229 Source [?]: RNase P Database Source ID [?]: Zygosaccharomyces rouxii, strain NRRL Y-229 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 295 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 169 Number of paired bases [?]: 126

Click on any header below for additional features.

Stem features Number of stems [?]: 12 Number of base pairs in stems [?]: 63 Maximum length of a stem [?]: 8 Average length of a stem [?]: 5.25 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.43 Minimum estimated free energy [?]: -13.4

Hairpin loop features Number of hairpin loops [?]: 6 Maximum number of free bases in hairpin loops [?]: 11 Average number of free bases in hairpin loops [?]: 6.5 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 11 Average number of free bases in internal loops: 8.75 Minimum number of free bases in internal loop: 7 Maximum internal loop absolute asymmetry: 4 Average internal loop absolute asymmetry: 3.5 Minimum internal loop absolute asymmetry: 3 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 2 Maximum number of free bases in multi-loops: 37 Average number of free bases in multi-loops: 11.38 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 37 Average multi-loop absolute asymmetry: 14.59 Minimum multi-loop absolute asymmetry: 3 Maximum multi-loop relative asymmetry: 12.33 Average multi-loop relative asymmetry: 2.08 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 4 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 8 Total number of AA non-canonical base pairs: 2 Total number of AC non-canonical base pairs: 2 Total number of AG non-canonical base pairs: 2 Total number of CU non-canonical base pairs: 2

Pseudoknot features

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