RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00014 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00014 Molecule name [?]: THE STRUCTURE OF THE ISOLATED, CENTRAL HAIRPIN OF THE HDV ANTIGENOMIC RIBOZYME, NMR, 10 STRUCTURES Source [?]: RCSB Protein Data Bank Source ID [?]: 1ATO Reference [?]: M.H.KOLK,H.A.HEUS,C.W.HILBERS. THE STRUCTURE OF THE ISOLATED, CENTRAL HAIRPIN OF THE HDV ANTIGENOMIC RIBOZYME: NOVEL STRUCTURAL FEATURES AND SIMILARITY OF THE LOOP IN THE RIBOZYME AND FREE IN SOLUTION.. EMBO J. V. 16 3685 1997 ASTM EMJODG UK ISSN 0261-4189 Type [?]: Other Ribozyme [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 19 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 5 Number of paired bases [?]: 14

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 7 Maximum length of a stem [?]: 7 Average length of a stem [?]: 7 Minimum length of a stem [?]: 7 Maximum estimated free energy [?]: -14.3 Average estimated free energy [?]: -14.3 Minimum estimated free energy [?]: -14.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 5 Average number of free bases in hairpin loops [?]: 5 Minimum number of free bases in hairpin loop [?]: 5

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 1 Total number of CU non-canonical base pairs: 1

Pseudoknot features

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