RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00114
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00114
Molecule name [?]:	THE SOLUTION STRUCTURE OF THE MUTANT 5'AUG3' TRILOOP IN THE RNA PROMOTER REGION OF THE BROME MOSAIC
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1JZC
Reference [?]:	C.-H.KIM,C.C.KAO. A MUTANT VIRAL RNA PROMOTER WITH AN ALTERED CONFORMATION RETAINS EFFICIENT RECOGNITION BY A VIRAL RNA REPLICASE THROUGH A SOLUTION-EXPOSED ADENINE. RNA V. 7 1476 2001 ASTM RNARFU UK ISSN 1355-8382
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	13
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	5
Number of paired bases [?]:	8

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	4
Maximum length of a stem [?]:	4
Average length of a stem [?]:	4
Minimum length of a stem [?]:	4
Maximum estimated free energy [?]:	-7.6
Average estimated free energy [?]:	-7.6
Minimum estimated free energy [?]:	-7.6

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	5
Average number of free bases in hairpin loops [?]:	5
Minimum number of free bases in hairpin loop [?]:	5

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features