RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00144 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00144 Molecule name [?]: CRYSTAL STRUCTURE OF THE HIGHLY CONSERVED RNA INTERNAL LOOP OF SRP Source [?]: RCSB Protein Data Bank Source ID [?]: 1LNT Reference [?]: J.DENG,Y.XIONG,B.PAN,M.SUNDARALINGAM. STRUCTURE OF AN RNA DODECAMER CONTAINING A FRAGMENT FROM SRP DOMAIN IV OF ESCHERICHIA COLI.. ACTA CRYSTALLOGR.,SECT.D V. 59 1004 2003 ASTM ABCRE6 DK ISSN 0907-4449 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.70 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 24 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 2 Number of paired bases [?]: 22

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 11 Maximum length of a stem [?]: 6 Average length of a stem [?]: 5.5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -8.1 Average estimated free energy [?]: -8.2 Minimum estimated free energy [?]: -8.3

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 1 Average number of free bases in internal loops: 1 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 0 Average internal loop absolute asymmetry: 0 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 1 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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