RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00145 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00145 Molecule name [?]: SOLUTION STRUCTURE OF THE YEAST SPLICEOSOMAL U2 SNRNA- INTRON BRANCH SITE HELIX FEATURING A CONSERVE Source [?]: RCSB Protein Data Bank Source ID [?]: 1LPW Reference [?]: M.I.NEWBY,N.L.GREENBAUM. SCULPTING OF THE SPLICEOSOMAL BRANCH SITE RECOGNITION MOTIF BY A CONSERVED PSEUDOURIDINE. NAT.STRUCT.BIOL. V. 12 958 2002 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Small nuclear RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SACCHAROMYCES CEREVISIAE Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 19 Fragments used [?]: No Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 3 Number of paired bases [?]: 16

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 8 Maximum length of a stem [?]: 4 Average length of a stem [?]: 4 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -5.6 Average estimated free energy [?]: -6.6 Minimum estimated free energy [?]: -7.6

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 1 Maximum number of free bases in internal loops: 2 Average number of free bases in internal loops: 1.5 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 1 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 2 Minimum internal loop relative asymmetry: 2

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia