RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00206
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00206
Molecule name [?]:	24-MER RNA HAIRPIN COAT PROTEIN BINDING SITE FOR BACTERIOPHAGE R17 (NMR, MINIMIZED AVERAGE STRUCTURE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1RHT
Reference [?]:	P.N.BORER,Y.LIN,S.WANG,M.W.ROGGENBUCK,J.M.GOTT, O.C.UHLENBECK,I.PELCZER. PROTON NMR AND STRUCTURAL FEATURES OF A 24-NUCLEOTIDE RNA HAIRPIN.. BIOCHEMISTRY V. 34 6488 1995 ASTM BICHAW US ISSN 0006-2960
Type [?]:	Viral & Phage RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	24
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00220
Number of domains [?]:	1
Number of unpaired bases [?]:	8
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	6
Average length of a stem [?]:	4
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-2.4
Average estimated free energy [?]:	-6.65
Minimum estimated free energy [?]:	-10.9

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features