RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00213 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00213 Molecule name [?]: SOLUTION STRUCTURE OF MLV PSI SITE Source [?]: RCSB Protein Data Bank Source ID [?]: 1S9S Reference [?]: V.D'SOUZA,A.DEY,D.HABIB,M.F.SUMMERS. NMR STRUCTURE OF THE 101-NUCLEOTIDE CORE ENCAPSIDATION SIGNAL OF THE MOLONEY MURINE LEUKEMIA VIRUS.. J.MOL.BIOL. V. 337 427 2004 ASTM JMOBAK UK ISSN 0022-2836 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 101 Fragments used [?]: Yes Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00748 Number of domains [?]: 3 Number of unpaired bases [?]: 19 Number of paired bases [?]: 82

Click on any header below for additional features.

Stem features Number of stems [?]: 6 Number of base pairs in stems [?]: 41 Maximum length of a stem [?]: 14 Average length of a stem [?]: 6.83 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -5.7 Average estimated free energy [?]: -11.25 Minimum estimated free energy [?]: -22.9

Hairpin loop features Number of hairpin loops [?]: 3 Maximum number of free bases in hairpin loops [?]: 4 Average number of free bases in hairpin loops [?]: 2.67 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 4 Average number of free bases in bulge loops [?]: 1.17 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 5 Total number of AC non-canonical base pairs: 1 Total number of AG non-canonical base pairs: 3 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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