RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00224
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00224
Molecule name [?]:	STEM LOOP IIA FROM U2SNRNA OF SACCHAROMYCES CEREVISIAE, NMR, MINIMIZED AVERAGE STRUCTURE
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1U2A
Reference [?]:	S.C.STALLINGS,P.B.MOORE. THE STRUCTURE OF AN ESSENTIAL SPLICING ELEMENT: STEM LOOP IIA FROM YEAST U2 SNRNA.. STRUCTURE V. 5 1173 1997 ASTM STRUE6 UK ISSN 0969-2126
Type [?]:	Small nuclear RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SACCHAROMYCES CEREVISIAE
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	20
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00245
Number of domains [?]:	1
Number of unpaired bases [?]:	4
Number of paired bases [?]:	16

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	8
Maximum length of a stem [?]:	8
Average length of a stem [?]:	8
Minimum length of a stem [?]:	8
Maximum estimated free energy [?]:	-14.3
Average estimated free energy [?]:	-14.3
Minimum estimated free energy [?]:	-14.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features