RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00286
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00286
Molecule name [?]:	SATELLITE TOBACCO MOSAIC VIRUS/RNA COMPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1A34
Reference [?]:	S.B.LARSON,J.DAY,A.GREENWOOD,A.MCPHERSON. REFINED STRUCTURE OF SATELLITE TOBACCO MOSAIC VIRUS AT 1.8 A RESOLUTION.. J.MOL.BIOL. V. 277 37 1998 ASTM JMOBAK UK ISSN 0022-2836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.81 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	20
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	8
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-4.5
Average estimated free energy [?]:	-4.5
Minimum estimated free energy [?]:	-4.5

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features