RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00289
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00289
Molecule name [?]:	SOLUTION STRUCTURE OF PHAGE P22 N PEPTIDE-BOX B RNA COMPLEX, NMR, 20 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1A4T
Reference [?]:	Z.CAI,A.GORIN,R.FREDERICK,X.YE,W.HU,A.MAJUMDAR, A.KETTANI,D.J.PATEL. SOLUTION STRUCTURE OF P22 TRANSCRIPTIONAL ANTITERMINATION N PEPTIDE-BOXB RNA COMPLEX.. NAT.STRUCT.BIOL. V. 5 203 1998 ASTM NSBIEW US ISSN 1072-8368
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	BACTERIOPHAGE P22
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	15
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	3
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-11.3
Average estimated free energy [?]:	-11.3
Minimum estimated free energy [?]:	-11.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	3
Average number of free bases in hairpin loops [?]:	3
Minimum number of free bases in hairpin loop [?]:	3

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of AG non-canonical base pairs:	1

Pseudoknot features