RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00293
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00293
Molecule name [?]:	CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B''-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUC
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1A9N
Reference [?]:	S.R.PRICE,P.R.EVANS,K.NAGAI. CRYSTAL STRUCTURE OF THE SPLICEOSOMAL U2B"-U2A' PROTEIN COMPLEX BOUND TO A FRAGMENT OF U2 SMALL NUCLEAR RNA.. NATURE V. 394 645 1998 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Other RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	HOMO SAPIENS
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.38 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	48
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	24
Number of paired bases [?]:	24

Click on any header below for additional features.

Stem features

Number of stems [?]:	2
Number of base pairs in stems [?]:	12
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-10.8
Average estimated free energy [?]:	-10.8
Minimum estimated free energy [?]:	-10.8

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	11
Average number of free bases in hairpin loops [?]:	11
Minimum number of free bases in hairpin loop [?]:	11

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	2
Total number of UU non-canonical base pairs:	2

Pseudoknot features