RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00301
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00301
Molecule name [?]:	AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1AM0
Reference [?]:	F.JIANG,R.A.KUMAR,R.A.JONES,D.J.PATEL. STRUCTURAL BASIS OF RNA FOLDING AND RECOGNITION IN AN AMP-RNA APTAMER COMPLEX. NATURE V. 382 183 1996 ASTM NATUAS UK ISSN 0028-0836
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	1
Number of unpaired bases [?]:	12
Number of paired bases [?]:	4

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	2
Maximum length of a stem [?]:	2
Average length of a stem [?]:	2
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	0
Average estimated free energy [?]:	0
Minimum estimated free energy [?]:	0

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:	1
Total number of GG non-canonical base pairs:	1

Pseudoknot features