RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00303
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00303
Molecule name [?]:	BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEX
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1AQ3
Reference [?]:	S.H.VAN DEN WORM,N.J.STONEHOUSE,K.VALEGARD, J.B.MURRAY,C.WALTON,K.FRIDBORG,P.G.STOCKLEY, L.LILJAS. CRYSTAL STRUCTURES OF MS2 COAT PROTEIN MUTANTS IN COMPLEX WITH WILD-TYPE RNA OPERATOR FRAGMENTS.. NUCLEIC ACIDS RES. V. 26 1345 1998 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Viral & Phage RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	BACTERIOPHAGE MS2
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.80 ANGSTROMS; ran through RNAview
Number of molecules [?]:	2
Length [?]:	28
Fragments used [?]:	Yes
Duplicated sequence [?]:	No other molecule in the database has the same sequence
Number of domains [?]:	2
Number of unpaired bases [?]:	14
Number of paired bases [?]:	14

Click on any header below for additional features.

Stem features

Number of stems [?]:	3
Number of base pairs in stems [?]:	7
Maximum length of a stem [?]:	3
Average length of a stem [?]:	2.33
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.2
Average estimated free energy [?]:	-3.27
Minimum estimated free energy [?]:	-3.3

Hairpin loop features

Number of hairpin loops [?]:	2
Maximum number of free bases in hairpin loops [?]:	4
Average number of free bases in hairpin loops [?]:	4
Minimum number of free bases in hairpin loop [?]:	4

Bulge loop features

Number of bulge loops [?]:	1
Maximum number of free bases in bulge loops [?]:	1
Average number of free bases in bulge loops [?]:	0.5
Minimum number of free bases in bulge loop [?]:	0

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features