RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00342
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Format:

Molecule ID [?]:	PDB_00342
Molecule name [?]:	CRYSTAL STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA: MOLECULAR BASIS OF DOUBLE-STRANDED
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1DI2
Reference [?]:	J.M.RYTER,S.C.SCHULTZ. MOLECULAR BASIS OF DOUBLE-STRANDED RNA-PROTEIN INTERACTIONS: STRUCTURE OF A DSRNA-BINDING DOMAIN COMPLEXED WITH DSRNA.. EMBO J. V. 17 7505 1998 ASTM EMJODG UK ISSN 0261-4189
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 1.90 ANGSTROMS; ran through RNAview
Number of molecules [?]:	4
Length [?]:	40
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00688
Number of domains [?]:	1
Number of unpaired bases [?]:	20
Number of paired bases [?]:	20

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	10
Maximum length of a stem [?]:	10
Average length of a stem [?]:	10
Minimum length of a stem [?]:	10
Maximum estimated free energy [?]:	-27.4
Average estimated free energy [?]:	-27.4
Minimum estimated free energy [?]:	-27.4

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	0
Average number of free bases in hairpin loops [?]:	0
Minimum number of free bases in hairpin loop [?]:	0

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features