RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00349 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00349 Molecule name [?]: THE NMR STRUCTURE OF THE 38KDA U1A PROTEIN-PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REG Source [?]: RCSB Protein Data Bank Source ID [?]: 1DZ5 Reference [?]: L.VARANI,S.I.GUNDERSON,I.W.MATTAJ,L.E.KAY, D.NEUHAUS,G.VARANI. THE NMR STRUCTURE OF THE 38 KDA U1A PROTEIN - PIE RNA COMPLEX REVEALS THE BASIS OF COOPERATIVITY IN REGULATION OF POLYADENYLATION BY HUMAN U1A PROTEIN.. NAT.STRUCT.BIOL. V. 7 329 2000 ASTM NSBIEW US ISSN 1072-8368 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 2 Length [?]: 44 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 16 Number of paired bases [?]: 28

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 14 Maximum length of a stem [?]: 5 Average length of a stem [?]: 4.67 Minimum length of a stem [?]: 4 Maximum estimated free energy [?]: -9 Average estimated free energy [?]: -9.07 Minimum estimated free energy [?]: -9.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 7 Average number of free bases in internal loops: 4 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 6 Average internal loop absolute asymmetry: 6 Minimum internal loop absolute asymmetry: 6 Maximum internal loop relative asymmetry: 7 Average internal loop relative asymmetry: 7 Minimum internal loop relative asymmetry: 7

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

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