RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00357 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00357 Molecule name [?]: CRYSTAL STRUCTURE OF NOVA-2 KH3 K-HOMOLOGY RNA-BINDING DOMAIN BOUND TO 20-MER RNA HAIRPIN Source [?]: RCSB Protein Data Bank Source ID [?]: 1EC6 Reference [?]: H.A.LEWIS,K.MUSUNURU,K.B.JENSEN,C.EDO,H.CHEN, R.B.DARNELL,S.K.BURLEY. SEQUENCE-SPECIFIC RNA BINDING BY A NOVA KH DOMAIN: IMPLICATIONS FOR PARANEOPLASTIC DISEASE AND THE FRAGILE X SYNDROME.. CELL V. 100 323 2000 ASTM CELLB5 US ISSN 0092-8674 Type [?]: Other RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: HOMO SAPIENS Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.40 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 40 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 2 Number of unpaired bases [?]: 20 Number of paired bases [?]: 20

Click on any header below for additional features.

Stem features Number of stems [?]: 2 Number of base pairs in stems [?]: 10 Maximum length of a stem [?]: 5 Average length of a stem [?]: 5 Minimum length of a stem [?]: 5 Maximum estimated free energy [?]: -7.8 Average estimated free energy [?]: -7.8 Minimum estimated free energy [?]: -7.8

Hairpin loop features Number of hairpin loops [?]: 2 Maximum number of free bases in hairpin loops [?]: 10 Average number of free bases in hairpin loops [?]: 10 Minimum number of free bases in hairpin loop [?]: 10

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AC non-canonical base pairs: 2

Pseudoknot features

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