RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00483
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00483
Molecule name [
?
]:
CRYSTAL STRUCTURE OF RIBOTOXIN RESTRICTOCIN COMPLEXED WITH A 29-MER SARCIN/RICIN DOMAIN RNA ANALOG
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1JBT
Reference [
?
]:
X.YANG,T.GERCZEI,L.T.GLOVER,C.C.CORRELL. CRYSTAL STRUCTURES OF RESTRICTOCIN-INHIBITOR COMPLEXES WITH IMPLICATIONS FOR RNA RECOGNITION AND BASE FLIPPING.. NAT.STRUCT.BIOL. V. 8 968 2001 ASTM NSBIEW US ISSN 1072-8368
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
58
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
2
Number of unpaired bases [
?
]:
10
Number of paired bases [
?
]:
48
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
4
Number of base pairs in stems [
?
]:
24
Maximum length of a stem [
?
]:
9
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
3
Maximum estimated free energy [
?
]:
0
Average estimated free energy [
?
]:
-6.8
Minimum estimated free energy [
?
]:
-13.6
Hairpin loop features
Number of hairpin loops [
?
]:
2
Maximum number of free bases in hairpin loops [
?
]:
4
Average number of free bases in hairpin loops [
?
]:
4
Minimum number of free bases in hairpin loop [
?
]:
4
Bulge loop features
Number of bulge loops [
?
]:
2
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
8
Total number of AA non-canonical base pairs:
2
Total number of AG non-canonical base pairs:
2
Total number of CC non-canonical base pairs:
2
Total number of CU non-canonical base pairs:
2
Pseudoknot features
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