RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00603
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00603
Molecule name [
?
]:
SACCHARIDE-RNA RECOGNITION IN THE NEOMYCIN B / RNA APTAMER COMPLEX
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1NEM
Reference [
?
]:
L.JIANG,A.MAJUMDAR,W.HU,T.J.JAISHREE,W.XU,D.J.PATEL. SACCHARIDE-RNA RECOGNITION IN A COMPLEX FORMED BETWEEN NEOMYCIN B AND AN RNA APTAMER. STRUCTURE FOLD.DES. V. 7 817 1999 ASTM FODEFH UK ISSN 1359-0278
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
SYNTHETIC
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
23
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
3
Number of paired bases [
?
]:
20
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
1
Number of base pairs in stems [
?
]:
10
Maximum length of a stem [
?
]:
10
Average length of a stem [
?
]:
10
Minimum length of a stem [
?
]:
10
Maximum estimated free energy [
?
]:
-14.5
Average estimated free energy [
?
]:
-14.5
Minimum estimated free energy [
?
]:
-14.5
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
3
Average number of free bases in hairpin loops [
?
]:
3
Minimum number of free bases in hairpin loop [
?
]:
3
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
1
Total number of AG non-canonical base pairs:
1
Pseudoknot features
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