RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00692
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00692
Molecule name [
?
]:
MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTION: CO- CRYSTAL STRUCTURE OF THE ARCHAEAL SRNP INTIA
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1RLG
Reference [
?
]:
T.MOORE,Y.ZHANG,M.O.FENLEY,H.LI. MOLECULAR BASIS OF BOX C/D RNA-PROTEIN INTERACTIONS; COCRYSTAL STRUCTURE OF ARCHAEAL L7AE AND A BOX C/D RNA.. STRUCTURE V. 12 807 2004 ASTM STRUE6 UK ISSN 0969-2126
Type [
?
]:
Other Ribosomal RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.70 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
2
Length [
?
]:
50
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
2
Number of unpaired bases [
?
]:
10
Number of paired bases [
?
]:
40
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
4
Number of base pairs in stems [
?
]:
20
Maximum length of a stem [
?
]:
7
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
3
Maximum estimated free energy [
?
]:
-3.3
Average estimated free energy [
?
]:
-5.6
Minimum estimated free energy [
?
]:
-7.9
Hairpin loop features
Number of hairpin loops [
?
]:
2
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
2
Maximum number of free bases in bulge loops [
?
]:
3
Average number of free bases in bulge loops [
?
]:
1.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
8
Total number of AG non-canonical base pairs:
6
Total number of UU non-canonical base pairs:
2
Pseudoknot features
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