RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00732
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00732
Molecule name [
?
]:
HOW CCA IS ADDED TO THE 3' END OF IMMATURE TRNA WITHOUT THE USE OF AN OLIGONUCLEOTIDE TEMPLATE
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1TFW
Reference [
?
]:
Y.XIONG,T.A.STEITZ. MECHANISM OF TRANSFER RNA MATURATION BY CCA-ADDING ENZYME WITHOUT USING AN OLIGONUCLEOTIDE TEMPLATE.. NATURE V. 430 640 2004 ASTM NATUAS UK ISSN 0028-0836
Type [
?
]:
Transfer RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
ARCHAEOGLOBUS FULGIDUS
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
X-RAY, RESOLUTION 2.20 ANGSTROMS; ran through RNAview
Number of molecules [
?
]:
7
Length [
?
]:
78
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
No other molecule in the database has the same sequence
Number of domains [
?
]:
3
Number of unpaired bases [
?
]:
18
Number of paired bases [
?
]:
60
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
3
Number of base pairs in stems [
?
]:
30
Maximum length of a stem [
?
]:
10
Average length of a stem [
?
]:
10
Minimum length of a stem [
?
]:
10
Maximum estimated free energy [
?
]:
-20.6
Average estimated free energy [
?
]:
-21.8
Minimum estimated free energy [
?
]:
-24.1
Hairpin loop features
Number of hairpin loops [
?
]:
3
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
0
Maximum number of free bases in bulge loops [
?
]:
N/A
Average number of free bases in bulge loops [
?
]:
N/A
Minimum number of free bases in bulge loop [
?
]:
N/A
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
2
Total number of AC non-canonical base pairs:
2
Pseudoknot features
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