RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01096 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_01096 Molecule name [?]: SYNTHESIS, OXIDATION BEHAVIOR, CRYSTALLIZATION AND STRUCTURE OF 2'-METHYLSELENO GUANOSINE CONTAINING Source [?]: RCSB Protein Data Bank Source ID [?]: 2H1M Reference [?]: H.MORODER,C.KREUTZ,K.LANG,A.SERGANOV,R.MICURA. SYNTHESIS, OXIDATION BEHAVIOR, CRYSTALLIZATION AND STRUCTURE OF 2'-METHYLSELENO GUANOSINE CONTAINING RNAS.. J.AM.CHEM.SOC. V. 128 9909 2006 ASTM JACSAT US ISSN 0002-7863 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 2.90 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 32 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00263 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 32

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 16 Maximum length of a stem [?]: 16 Average length of a stem [?]: 16 Minimum length of a stem [?]: 16 Maximum estimated free energy [?]: -23.1 Average estimated free energy [?]: -23.1 Minimum estimated free energy [?]: -23.1

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AG non-canonical base pairs: 2

Pseudoknot features

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