RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule RFA_00807 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: RFA_00807 Molecule name [?]: RNAIII, RF00503, BX571857.1/2086973-2086458 Source [?]: Rfam Database Source ID [?]: RF00503 BX571857.1/2086458-2086973 Reference [?]: Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy and Alex Bateman, Rfam: annotating non-coding RNAs in complete genomes, Nucleic Acids Res. 2005 33:D121-D124. Type [?]: RNAIII [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 516 Fragments used [?]: N/A Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 3 Number of unpaired bases [?]: 216 Number of paired bases [?]: 300

Click on any header below for additional features.

Stem features Number of stems [?]: 24 Number of base pairs in stems [?]: 150 Maximum length of a stem [?]: 11 Average length of a stem [?]: 6.25 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -7.87 Minimum estimated free energy [?]: -18.2

Hairpin loop features Number of hairpin loops [?]: 14 Maximum number of free bases in hairpin loops [?]: 13 Average number of free bases in hairpin loops [?]: 7.57 Minimum number of free bases in hairpin loop [?]: 4

Bulge loop features Number of bulge loops [?]: 5 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.6 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 4 Average number of free bases in internal loops: 2 Minimum number of free bases in internal loop: 1 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 1 Minimum internal loop absolute asymmetry: 0 Maximum internal loop relative asymmetry: 2 Average internal loop relative asymmetry: 1.5 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 3 Maximum number of free bases in multi-loops: 8 Average number of free bases in multi-loops: 3.41 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 6 Average multi-loop absolute asymmetry: 2.61 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 1.08 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 9 Average number of branches in multi-loops: 5.67 Minimum number of branches in multi-loops: 4

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of AA non-canonical base pairs: 1 Total number of AC non-canonical base pairs: 1

Pseudoknot features

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