RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00896 STRUCTURAL BASIS FOR RECOGNITION OF UUUOH 3'-TERMINII OF NASCENT RNA POL III TRANSCRIPTS BY LA AUTOA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1ZH5 18 PDB_00916 CRYSTAL STRUCTURE OF RNA OLIGOMER CONTAINING 4'-THIORIBOSE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2A0P 16 PDB_00917 CRYSTAL STRUCTURE OF THE RNA SUBUNIT OF RIBONUCLEASE P. BACTERIAL A-TYPE. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2A2E 266 PDB_00921 TAR RNA RECOGNITION BY A CYCLIC PEPTIDOMIMETIC OF TAT PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2A9X 28 PDB_00924 NMR STRUCTURE OF A 30 KDA GAAA TETRALOOP-RECEPTOR COMPLEX. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2ADT 86 PDB_00929 CRYSTAL STRUCTURE OF AN RNA DUPLEX R(GGCGBRUGCGCU)2 WITH TERMINAL AND INTERNAL TANDEM G-U BASE PAIRS Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AO5 40 PDB_00930 SOLUTION STRUCTURE OF THE C27A SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, 20 LOWEST ENERGY STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AP0 28 PDB_00931 SOLUTION STRUCTURE OF THE C27A SCYLV P1-P2 FRAMESHIFTING PSEUDOKNOT, AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AP5 28 PDB_00932 CLASS I GTP APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AU4 41 PDB_00937 FLOCK HOUSE VIRUS B2-DSRNA COMPLEX (P212121) Synthetic RNA SYNTHETIC RCSB Protein Data Bank 2AZ0 36

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia