RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00006
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Format:
Molecule ID [?]:PDB_00006
Molecule name [?]:SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-
Source [?]:RCSB Protein Data Bank
Source ID [?]:1A9L
Reference [?]:J.L.DIENER,P.B.MOORE. SOLUTION STRUCTURE OF A SUBSTRATE FOR THE ARCHAEAL PRE-TRNA SPLICING ENDONUCLEASES: THE BULGE-HELIX-BULGE MOTIF.. MOL.CELL V. 1 883 1998 ASTM MOCEFL US ISSN 1097-2765
Type [?]:Other RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:1
Length [?]:38
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00745, PDB_00240
Number of domains [?]:1
Number of unpaired bases [?]:10
Number of paired bases [?]:28

Click on any header below for additional features.

Stem features

Number of stems [?]:3
Number of base pairs in stems [?]:14
Maximum length of a stem [?]:6
Average length of a stem [?]:4.67
Minimum length of a stem [?]:4
Maximum estimated free energy [?]:-7.8
Average estimated free energy [?]:-9.67
Minimum estimated free energy [?]:-13.3

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:4
Average number of free bases in hairpin loops [?]:4
Minimum number of free bases in hairpin loop [?]:4

Bulge loop features
Number of bulge loops [?]:2
Maximum number of free bases in bulge loops [?]:3
Average number of free bases in bulge loops [?]:1.5
Minimum number of free bases in bulge loop [?]:0

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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