RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00061
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00061
Molecule name [
?
]:
SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE, NMR, ENSEMBLE OF 9 STRUC
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1F7F
Reference [
?
]:
M.SCHMITZ,I.TINOCO JR.. SOLUTION STRUCTURE AND METAL-ION BINDING OF THE P4 ELEMENT FROM BACTERIAL RNASE P RNA.. RNA V. 6 1212 2000 ASTM RNARFU UK ISSN 1355-8382
Type [
?
]:
Ribonuclease P RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
N/A
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
27
Fragments used [
?
]:
Yes
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00057
,
PDB_00059
,
PDB_00063
,
PDB_00975
,
PDB_00977
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
3
Number of paired bases [
?
]:
24
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
2
Number of base pairs in stems [
?
]:
12
Maximum length of a stem [
?
]:
7
Average length of a stem [
?
]:
6
Minimum length of a stem [
?
]:
5
Maximum estimated free energy [
?
]:
-8.7
Average estimated free energy [
?
]:
-12.2
Minimum estimated free energy [
?
]:
-15.7
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
1
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
0
Pseudoknot features
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