RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule PDB_00162
(click to expand/contract all tables)

Format:
Molecule ID [?]:PDB_00162
Molecule name [?]:THE TANDEM, SHEARED PA PAIRS IN 5'(RGGCPAGCCU)2
Source [?]:RCSB Protein Data Bank
Source ID [?]:1MV1
Reference [?]:B.M.ZNOSKO,M.E.BURKARD,T.R.KRUGH,D.H.TURNER. MOLECULAR RECOGNITION IN PURINE-RICH INTERNAL LOOPS: THERMODYNAMIC, STRUCTURAL, AND DYNAMIC CONSEQUENCES OF PURINE FOR ADENINE SUBSTITUTIONS IN 5'(RGGCAAGCCU)2. BIOCHEMISTRY V. 41 14978 2002 ASTM BICHAW US ISSN 0006-2960
Type [?]:Synthetic RNA

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:SYNTHETIC
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:NMR; ran through RNAview
Number of molecules [?]:2
Length [?]:18
Fragments used [?]:Yes
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00161, PDB_00163, PDB_00164
Number of domains [?]:1
Number of unpaired bases [?]:2
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-13.4
Average estimated free energy [?]:-13.4
Minimum estimated free energy [?]:-13.4

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:1
Average number of free bases in hairpin loops [?]:1
Minimum number of free bases in hairpin loop [?]:1

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 2
Total number of AA non-canonical base pairs:2

Pseudoknot features



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