RNA STRAND v2.0
- The RNA secondary STRucture and statistical ANalysis Database
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General features for molecule PDB_00371
(click to expand/contract all tables)
Format:
CT
RNAML
Bpseq
Dot-parentheses
FASTA
Molecule ID [
?
]:
PDB_00371
Molecule name [
?
]:
REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE
Source [
?
]:
RCSB Protein Data Bank
Source ID [
?
]:
1ETF
Reference [
?
]:
J.L.BATTISTE,H.MAO,N.S.RAO,R.TAN,D.R.MUHANDIRAM, L.E.KAY,A.D.FRANKEL,J.R.WILLIAMSON. ALPHA HELIX-RNA MAJOR GROOVE RECOGNITION IN AN HIV-1 REV PEPTIDE-RRE RNA COMPLEX.. SCIENCE V. 273 1547 1996 ASTM SCIEAS US ISSN 0036-8075
Type [
?
]:
Synthetic RNA
[
?
]
PS figure
PDF figure
Figure from original source
Organism [
?
]:
HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
Validated by NMR or X-Ray [
?
]:
Yes
Method for secondary structure determination [
?
]:
NMR; ran through RNAview
Number of molecules [
?
]:
1
Length [
?
]:
34
Fragments used [
?
]:
No
Duplicated sequence [
?
]:
Molecules in the database with the same sequence:
PDB_00372
,
PDB_00460
Number of domains [
?
]:
1
Number of unpaired bases [
?
]:
4
Number of paired bases [
?
]:
30
Click on any header below for additional features.
Stem features
Number of stems [
?
]:
3
Number of base pairs in stems [
?
]:
15
Maximum length of a stem [
?
]:
7
Average length of a stem [
?
]:
5
Minimum length of a stem [
?
]:
3
Maximum estimated free energy [
?
]:
-2.4
Average estimated free energy [
?
]:
-7.17
Minimum estimated free energy [
?
]:
-11.5
Hairpin loop features
Number of hairpin loops [
?
]:
1
Maximum number of free bases in hairpin loops [
?
]:
2
Average number of free bases in hairpin loops [
?
]:
2
Minimum number of free bases in hairpin loop [
?
]:
2
Bulge loop features
Number of bulge loops [
?
]:
2
Maximum number of free bases in bulge loops [
?
]:
1
Average number of free bases in bulge loops [
?
]:
0.5
Minimum number of free bases in bulge loop [
?
]:
0
Internal loop features
Multi-loop features
Non-canonical base pairs features
Total number of non-canonical base pairs [
?
]:
3
Total number of AG non-canonical base pairs:
2
Total number of GG non-canonical base pairs:
1
Pseudoknot features
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