RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00460 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00460 Molecule name [?]: STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE Source [?]: RCSB Protein Data Bank Source ID [?]: 1I9F Reference [?]: Q.ZHANG,K.HARADA,H.S.CHO,A.D.FRANKEL,D.E.WEMMER. STRUCTURAL CHARACTERIZATION OF THE COMPLEX OF THE REV RESPONSE ELEMENT RNA WITH A SELECTED PEPTIDE.. CHEM.BIOL. V. 8 511 2001 ASTM CBOLE2 UK ISSN 1074-5521 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: NMR; ran through RNAview Number of molecules [?]: 1 Length [?]: 34 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: PDB_00371, PDB_00372 Number of domains [?]: 1 Number of unpaired bases [?]: 4 Number of paired bases [?]: 30

Click on any header below for additional features.

Stem features Number of stems [?]: 3 Number of base pairs in stems [?]: 15 Maximum length of a stem [?]: 7 Average length of a stem [?]: 5 Minimum length of a stem [?]: 3 Maximum estimated free energy [?]: -2.4 Average estimated free energy [?]: -7.17 Minimum estimated free energy [?]: -11.5

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 2 Average number of free bases in hairpin loops [?]: 2 Minimum number of free bases in hairpin loop [?]: 2

Bulge loop features Number of bulge loops [?]: 2 Maximum number of free bases in bulge loops [?]: 1 Average number of free bases in bulge loops [?]: 0.5 Minimum number of free bases in bulge loop [?]: 0

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 3 Total number of AG non-canonical base pairs: 2 Total number of GG non-canonical base pairs: 1

Pseudoknot features

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