RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00588
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00588
Molecule name [?]:	LAMBDA3 ELONGATION COMPLEX WITH FOUR PHOSPHODIESTER BOND FORMED
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1N35
Reference [?]:	Y.TAO,D.L.FARSETTA,M.L.NIBERT,S.C.HARRISON. RNA SYNTHESIS IN A CAGE--STRUCTURAL STUDIES OF REOVIRUS POLYMERASE [LAMBDA] 3. CELL (CAMBRIDGE,MASS.) V. 111 733 2002 ASTM CELLB5 US ISSN 0092-8674
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 2.50 ANGSTROMS; ran through RNAview
Number of molecules [?]:	3
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00753
Number of domains [?]:	1
Number of unpaired bases [?]:	12
Number of paired bases [?]:	4

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	2
Maximum length of a stem [?]:	2
Average length of a stem [?]:	2
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.3
Average estimated free energy [?]:	-3.3
Minimum estimated free energy [?]:	-3.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features