RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00753
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00753
Molecule name [?]:	REOVIRUS POLYMERASE LAMBDA-3 LOCALIZED BY ELECTRON CRYOMICROSCOPY OF VIRIONS AT 7.6-A RESOLUTION
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1UON
Reference [?]:	X.ZHANG,S.B.WALKER,P.R.CHIPMAN,M.L.NIBERT,T.S.BAKER. REOVIRUS POLYMERASE LAMBDA 3 LOCALIZED BY CRYO-ELECTRON MICROSCOPY OF VIRIONS AT A RESOLUTION OF 7.6 A.. NAT.STRUCT.BIOL. V. 10 1011 2003 ASTM NSBIEW US ISSN 1072-8368
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	N/A
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	X-RAY, RESOLUTION 7.60 ANGSTROMS; ran through RNAview
Number of molecules [?]:	3
Length [?]:	16
Fragments used [?]:	No
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00588
Number of domains [?]:	1
Number of unpaired bases [?]:	12
Number of paired bases [?]:	4

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	2
Maximum length of a stem [?]:	2
Average length of a stem [?]:	2
Minimum length of a stem [?]:	2
Maximum estimated free energy [?]:	-3.3
Average estimated free energy [?]:	-3.3
Minimum estimated free energy [?]:	-3.3

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features