RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_01148
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_01148
Molecule name [?]:	NMR SOLUTION STRUCTURE OF THE ANTICODON OF E. COLI TRNA- VAL3 WITH 2 MODIFICATIONS (CMO5U34 M6A37)
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	2JRG
Reference [?]:	F.A.P.VENDEIX,A.DZIERGOWSKA,E.M.GUSTILO,W.D.GRAHAM, B.SPROAT,A.MALKIEWICZ,P.F.AGRIS. WOBBLE-POSITION MODIFICATIONS PRE-STRUCTURE TRNA'S ANTICODON FOR RIBOSOME-MEDIATED CODON BINDING. TO BE PUBLISHED
Type [?]:	Transfer RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	E. COLI
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	17
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_01147, PDB_01149, PDB_01151
Number of domains [?]:	1
Number of unpaired bases [?]:	7
Number of paired bases [?]:	10

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	5
Maximum length of a stem [?]:	5
Average length of a stem [?]:	5
Minimum length of a stem [?]:	5
Maximum estimated free energy [?]:	-11.1
Average estimated free energy [?]:	-11.1
Minimum estimated free energy [?]:	-11.1

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	7
Average number of free bases in hairpin loops [?]:	7
Minimum number of free bases in hairpin loop [?]:	7

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features