RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00306 RNase P RNA, Saccharomonospora caesia, strain K163 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K163 339 ASE_00307 RNase P RNA, Saccharomonospora caesia, strain K182 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K182 339 ASE_00308 RNase P RNA, Saccharomonospora caesia, strain K200 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K200 339 ASE_00309 RNase P RNA, Saccharomonospora caesia, strain K76T RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain K76T 339 ASE_00310 RNase P RNA, Saccharomonospora caesia, strain SB01 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain SB01 339 ASE_00311 RNase P RNA, Saccharomonospora caesia, strain SB22 RNase P RNA Unknown RNase P Database Saccharomonospora caesia, strain SB22 339 ASE_00312 RNase P RNA, Saccharomyces carlbergensis RNase P RNA Unknown RNase P Database Saccharomyces carlbergensis 359 ASE_00313 RNase P RNA, Saccharomyces castellii, strain NRRL Y-12630 RNase P RNA Unknown RNase P Database Saccharomyces castellii, strain NRRL Y-12630 354 ASE_00314 RNase P RNA, Saccharomyces cerevisiae RNase P RNA Saccharomyces cerevisiae RNase P Database Saccharomyces cerevisiae 369 ASE_00315 RNase P RNA, Saccharomonospora cyanea, strain K168T RNase P RNA Unknown RNase P Database Saccharomonospora cyanea, strain K168T 339

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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