RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00327 RNase P RNA, Saccharomyces globosus RNase P RNA Unknown RNase P Database Saccharomyces globosus 339 ASE_00328 RNase P RNA, Streptococcus gordonii RNase P RNA Unknown RNase P Database Streptococcus gordonii 382 ASE_00329 RNase P RNA, Schizosaccharomyces japonicus RNase P RNA Unknown RNase P Database Schizosaccharomyces japonicus 286 ASE_00330 RNase P RNA, Saccharomyces kluveri RNase P RNA Unknown RNase P Database Saccharomyces kluveri 336 ASE_00331 RNase P RNA, Serratia liquefaciens, strain JCM 1245 RNase P RNA Unknown RNase P Database Serratia liquefaciens, strain JCM 1245 303 ASE_00332 RNase P RNA, Streptomyces lividans, strain 1326 RNase P RNA Unknown RNase P Database Streptomyces lividans, strain 1326 405 ASE_00333 RNase P RNA, Schizosaccharomyces malidevorans RNase P RNA Unknown RNase P Database Schizosaccharomyces malidevorans 286 ASE_00334 RNase P RNA, Serratia marcescens RNase P RNA Unknown RNase P Database Serratia marcescens 378 ASE_00335 RNase P RNA, Streptococcus mutans RNase P RNA Unknown RNase P Database Streptococcus mutans 389 ASE_00336 RNase P RNA, Simkania negevensis, strain Z RNase P RNA Unknown RNase P Database Simkania negevensis, strain Z 249

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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