RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Bulge loop features Number of bulge loops, per molecule: Greater than or equal to 1

Search results: 2898 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00357 RNase P RNA, Saccharomonospora sp., strain K180 RNase P RNA Unknown RNase P Database Saccharomonospora sp., strain K180 337 ASE_00358 RNase P RNA, Sludge 1-1 RNase P RNA Unknown RNase P Database Sludge 1-1 252 ASE_00359 RNase P RNA, Wastewater SL2D RNase P RNA Unknown RNase P Database Wastewater SL2D 293 ASE_00360 RNase P RNA, Wastewater SL-C RNase P RNA Unknown RNase P Database Wastewater SL-C 243 ASE_00361 RNase P RNA, Salt Marsh A01 RNase P RNA Unknown RNase P Database Salt Marsh A01 389 ASE_00362 RNase P RNA, Salt Marsh A02 RNase P RNA Unknown RNase P Database Salt Marsh A02 311 ASE_00363 RNase P RNA, Salt Marsh A03 RNase P RNA Unknown RNase P Database Salt Marsh A03 321 ASE_00364 RNase P RNA, Salt Marsh A04 RNase P RNA Unknown RNase P Database Salt Marsh A04 330 ASE_00365 RNase P RNA, Salt Marsh A05 (= E.coli) RNase P RNA Unknown RNase P Database Salt Marsh A05 (= E.coli) 302 ASE_00366 RNase P RNA, Salt Marsh A06 RNase P RNA Unknown RNase P Database Salt Marsh A06 343

Analyse the 2898 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2898 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2898 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia