RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Internal loop features Number of internal loops per molecule: Greater than or equal to 1

Search results: 2992 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00001 RNase P RNA, Acidianus ambivalens, strain DSM 3772 RNase P RNA Unknown RNase P Database Acidianus ambivalens, strain DSM 3772 262 ASE_00002 RNase P RNA, Acidianus brierleyi, strain DSM 1651 RNase P RNA Unknown RNase P Database Acidianus brierleyi, strain DSM 1651 267 ASE_00003 RNase P RNA, Azotobacter chroococcum, strain ATCC 9043 RNase P RNA Unknown RNase P Database Azotobacter chroococcum, strain ATCC 9043 294 ASE_00005 RNase P RNA, Ralstonia eutrophus, strain DSM 531 RNase P RNA Unknown RNase P Database Ralstonia eutrophus, strain DSM 531 341 ASE_00006 RNase P RNA, Aeromicrobium erythreum, strain NRRL B-3381 RNase P RNA Unknown RNase P Database Aeromicrobium erythreum, strain NRRL B-3381 309 ASE_00009 RNase P RNA, Archaeoglobus fulgidus, strain DSM 4304 RNase P RNA Archaeoglobus fulgidus RNase P Database Archaeoglobus fulgidus, strain DSM 4304 229 ASE_00010 RNase P RNA, Acholeplasma laidlawii, strain JA-1 RNase P RNA Unknown RNase P Database Acholeplasma laidlawii, strain JA-1 316 ASE_00011 RNase P RNA, Azomonas macrocytogenes, strain 123 RNase P RNA Unknown RNase P Database Azomonas macrocytogenes, strain 123 294 ASE_00013 RNase P RNA, Azotobacter paspali, strain 28333 RNase P RNA Unknown RNase P Database Azotobacter paspali, strain 28333 294 ASE_00014 RNase P RNA, Aeropyrum pernix, strain K1 RNase P RNA Unknown RNase P Database Aeropyrum pernix, strain K1 330

Analyse the 2992 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2992 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2992 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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