RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule ASE_00010 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: ASE_00010 Molecule name [?]: RNase P RNA, Acholeplasma laidlawii, strain JA-1 Source [?]: RNase P Database Source ID [?]: Acholeplasma laidlawii, strain JA-1 Reference [?]: James W. Brown (1999) The Ribonuclease P Database. Nucleic Acids Research 27:314. Type [?]: Ribonuclease P RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: N/A Validated by NMR or X-Ray [?]: No Method for secondary structure determination [?]: Comparative sequence analysis Number of molecules [?]: 1 Length [?]: 316 Fragments used [?]: Yes Duplicated sequence [?]: No other molecule in the database has the same sequence Number of domains [?]: 1 Number of unpaired bases [?]: 152 Number of paired bases [?]: 164

Click on any header below for additional features.

Stem features Number of stems [?]: 18 Number of base pairs in stems [?]: 82 Maximum length of a stem [?]: 8 Average length of a stem [?]: 4.56 Minimum length of a stem [?]: 1 Maximum estimated free energy [?]: 0 Average estimated free energy [?]: -6.38 Minimum estimated free energy [?]: -10.9

Hairpin loop features Number of hairpin loops [?]: 9 Maximum number of free bases in hairpin loops [?]: 13 Average number of free bases in hairpin loops [?]: 6.67 Minimum number of free bases in hairpin loop [?]: 3

Bulge loop features Number of bulge loops [?]: 3 Maximum number of free bases in bulge loops [?]: 2 Average number of free bases in bulge loops [?]: 0.67 Minimum number of free bases in bulge loop [?]: 0

Internal loop features Number of internal loops [?]: 2 Maximum number of free bases in internal loops: 11 Average number of free bases in internal loops: 8.75 Minimum number of free bases in internal loop: 7 Maximum internal loop absolute asymmetry: 2 Average internal loop absolute asymmetry: 1.5 Minimum internal loop absolute asymmetry: 1 Maximum internal loop relative asymmetry: 1 Average internal loop relative asymmetry: 1 Minimum internal loop relative asymmetry: 1

Multi-loop features Number of multi-loops [?]: 4 Maximum number of free bases in multi-loops: 15 Average number of free bases in multi-loops: 2.94 Minimum number of free bases in multi-loop: 0 Maximum multi-loop absolute asymmetry: 15 Average multi-loop absolute asymmetry: 3.88 Minimum multi-loop absolute asymmetry: 0 Maximum multi-loop relative asymmetry: 5 Average multi-loop relative asymmetry: 0.39 Minimum multi-loop relative asymmetry: 0 Maximum number of branches in multi-loops: 6 Average number of branches in multi-loops: 4 Minimum number of branches in multi-loops: 3

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 2 Total number of GG non-canonical base pairs: 1 Total number of UU non-canonical base pairs: 1

Pseudoknot features

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