RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Non-canonical base pairs features Number of any non-canonical base pairs per molecule, whose nearest neighbours are: any and any , and second nearest neighbours are any and any: Greater than or equal to 1

Search results: 2296 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00242 RNase P RNA, Pseudomonas aeruginosa, strain PAO1 RNase P RNA Unknown RNase P Database Pseudomonas aeruginosa, strain PAO1 350 ASE_00243 RNase P RNA, Providencia alcalifaciens, strain ATCC 9886 RNase P RNA Unknown RNase P Database Providencia alcalifaciens, strain ATCC 9886 301 ASE_00244 RNase P RNA, Pseudomonas azotoformans, strain IAM 1603 RNase P RNA Unknown RNase P Database Pseudomonas azotoformans, strain IAM 1603 293 ASE_00245 RNase P RNA, Pichia canadensis, strain NRRL Y-2340 RNase P RNA Unknown RNase P Database Pichia canadensis, strain NRRL Y-2340 333 ASE_00246 RNase P RNA, Pelobates cultripes RNase P RNA Unknown RNase P Database Pelobates cultripes 311 ASE_00247 RNase P RNA, Phrynosoma douglassii RNase P RNA Unknown RNase P Database Phrynosoma douglassii 330 ASE_00248 RNase P RNA, Pseudomonas fluorescens, strain type C RNase P RNA Unknown RNase P Database Pseudomonas fluorescens, strain type C 354 ASE_00250 RNase P RNA, Porphyromonas gingivalis, strain W83 RNase P RNA Unknown RNase P Database Porphyromonas gingivalis, strain W83 398 ASE_00252 RNase P RNA, Prochlorothrix hollandica, strain PCC 9006 RNase P RNA Unknown RNase P Database Prochlorothrix hollandica, strain PCC 9006 481 ASE_00254 RNase P RNA, Propioniferax innocua, strain DSM 8251 RNase P RNA Unknown RNase P Database Propioniferax innocua, strain DSM 8251 272

Analyse the 2296 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2296 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2296 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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