RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any Non-canonical base pairs features Number of any non-canonical base pairs per molecule, whose nearest neighbours are: any and any , and second nearest neighbours are any and any: Greater than or equal to 1

Search results: 2296 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] ASE_00320 RNase P RNA, Streptococcus equi, strain equi RNase P RNA Unknown RNase P Database Streptococcus equi, strain equi 331 ASE_00321 RNase P RNA, Streptococcus faciem, strain JCM RNase P RNA Unknown RNase P Database Streptococcus faciem, strain JCM 331 ASE_00323 RNase P RNA, Saccharomonospora glauca, strain K194 RNase P RNA Unknown RNase P Database Saccharomonospora glauca, strain K194 340 ASE_00324 RNase P RNA, Saccharomonospora glauca, strain K195 RNase P RNA Unknown RNase P Database Saccharomonospora glauca, strain K195 340 ASE_00325 RNase P RNA, Saccharomonospora glauca, strain K202 RNase P RNA Unknown RNase P Database Saccharomonospora glauca, strain K202 340 ASE_00326 RNase P RNA, Saccharomonospora glauca, strain L169T RNase P RNA Unknown RNase P Database Saccharomonospora glauca, strain L169T 340 ASE_00327 RNase P RNA, Saccharomyces globosus RNase P RNA Unknown RNase P Database Saccharomyces globosus 339 ASE_00328 RNase P RNA, Streptococcus gordonii RNase P RNA Unknown RNase P Database Streptococcus gordonii 382 ASE_00329 RNase P RNA, Schizosaccharomyces japonicus RNase P RNA Unknown RNase P Database Schizosaccharomyces japonicus 286 ASE_00330 RNase P RNA, Saccharomyces kluveri RNase P RNA Unknown RNase P Database Saccharomyces kluveri 336

Analyse the 2296 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 2296 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 2296 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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