RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Other Ribozyme Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 53 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00242 SOLUTION STRUCTURE OF THE LEAD-DEPENDENT RIBOZYME, NMR, MINIMIZED AVERAGE STRUCTURE Other Ribozyme Unknown RCSB Protein Data Bank 2LDZ 30 PDB_00335 HEPATITIS DELTA VIRUS RIBOZYME Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1CX0 72 PDB_00346 U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1DRZ 72 PDB_00714 HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH MG2+ BOUND Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1SJ3 73 PDB_00715 CRYSTAL STRUCTURE OF A C75U MUTANT HEPATITIS DELTA VIRUS RIBOZYME PRECURSOR, IN CU2+ SOLUTION Other Ribozyme HEPATITIS DELTA VIRUS RCSB Protein Data Bank 1SJ4 73 PDB_00716 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN COB Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1SJF 74 PDB_00730 NMR STRUCTURE OF THE VS RIBOZYME STEM-LOOP V RNA IN THE ABSENCE OF MULTIVALENT IONS. Other Ribozyme Unknown RCSB Protein Data Bank 1TBK 17 PDB_00734 SOLUTION STRUCTURE OF THE ACTIVE SITE STEM-LOOP OF THE VS RIBOZYME Other Ribozyme Unknown RCSB Protein Data Bank 1TJZ 22 PDB_00760 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, IN EDT Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VBX 73 PDB_00761 CRYSTAL STRUCTURE OF THE HEPATITIS DELTA VIRUS GEMONIC RIBOZYME PRECURSOR, WITH C75U MUTAION, AND MN Other Ribozyme HOMO SAPIENS RCSB Protein Data Bank 1VBY 73

Analyse the 53 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 53 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 53 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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