RNA STRAND molecule page

RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00361
(click to expand/contract all tables)

Format:

Molecule ID [?]:	PDB_00361
Molecule name [?]:	STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEM
Source [?]:	RCSB Protein Data Bank
Source ID [?]:	1EI2
Reference [?]:	L.VARANI,M.G.SPILLANTINI,M.GOEDERT,G.VARANI. STRUCTURAL BASIS FOR RECOGNITION OF THE RNA MAJOR GROOVE IN THE TAU EXON 10 SPLICING REGULATORY ELEMENT BY AMINOGLYCOSIDE ANTIBIOTICS.. NUCLEIC ACIDS RES. V. 28 710 2000 ASTM NARHAD UK ISSN 0305-1048
Type [?]:	Synthetic RNA	[?] PS figure PDF figure Figure from original source
Organism [?]:	SYNTHETIC
Validated by NMR or X-Ray [?]:	Yes
Method for secondary structure determination [?]:	NMR; ran through RNAview
Number of molecules [?]:	1
Length [?]:	25
Fragments used [?]:	Yes
Duplicated sequence [?]:	Molecules in the database with the same sequence: PDB_00197
Number of domains [?]:	1
Number of unpaired bases [?]:	13
Number of paired bases [?]:	12

Click on any header below for additional features.

Stem features

Number of stems [?]:	1
Number of base pairs in stems [?]:	6
Maximum length of a stem [?]:	6
Average length of a stem [?]:	6
Minimum length of a stem [?]:	6
Maximum estimated free energy [?]:	-11
Average estimated free energy [?]:	-11
Minimum estimated free energy [?]:	-11

Hairpin loop features

Number of hairpin loops [?]:	1
Maximum number of free bases in hairpin loops [?]:	6
Average number of free bases in hairpin loops [?]:	6
Minimum number of free bases in hairpin loop [?]:	6

Bulge loop features

Number of bulge loops [?]:	0
Maximum number of free bases in bulge loops [?]:	N/A
Average number of free bases in bulge loops [?]:	N/A
Minimum number of free bases in bulge loop [?]:	N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features

Total number of non-canonical base pairs [?]:

Pseudoknot features