RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

General features for molecule PDB_00455 (click to expand/contract all tables) Format: CT RNAML Bpseq Dot-parentheses FASTA Molecule ID [?]: PDB_00455 Molecule name [?]: CRYSTAL STRUCTURE OF 2'-O-ME(CGCGCG)2: AN RNA DUPLEX AT 1.19 A RESOLUTION. 2-METHYL-2,4-PENTANEDIOL Source [?]: RCSB Protein Data Bank Source ID [?]: 1I7J Reference [?]: D.A.ADAMIAK,W.R.RYPNIEWSKI,J.MILECKI,R.W.ADAMIAK. THE 1.19 A X-RAY STRUCTURE OF 2'-O-ME(CGCGCG)(2) DUPLEX SHOWS DEHYDRATED RNA WITH 2-METHYL-2,4-PENTANEDIOL IN THE MINOR GROOVE.. NUCLEIC ACIDS RES. V. 29 4144 2001 ASTM NARHAD UK ISSN 0305-1048 Type [?]: Synthetic RNA [?]     PS figure     PDF figure Figure from original source Organism [?]: SYNTHETIC Validated by NMR or X-Ray [?]: Yes Method for secondary structure determination [?]: X-RAY, RESOLUTION 1.19 ANGSTROMS; ran through RNAview Number of molecules [?]: 2 Length [?]: 12 Fragments used [?]: No Duplicated sequence [?]: Molecules in the database with the same sequence: NDB_00071, NDB_00072, NDB_00075, PDB_00639, PDB_00188, PDB_00729, PDB_01288 Number of domains [?]: 1 Number of unpaired bases [?]: 0 Number of paired bases [?]: 12

Click on any header below for additional features.

Stem features Number of stems [?]: 1 Number of base pairs in stems [?]: 6 Maximum length of a stem [?]: 6 Average length of a stem [?]: 6 Minimum length of a stem [?]: 6 Maximum estimated free energy [?]: -14 Average estimated free energy [?]: -14 Minimum estimated free energy [?]: -14

Hairpin loop features Number of hairpin loops [?]: 1 Maximum number of free bases in hairpin loops [?]: 0 Average number of free bases in hairpin loops [?]: 0 Minimum number of free bases in hairpin loop [?]: 0

Bulge loop features Number of bulge loops [?]: 0 Maximum number of free bases in bulge loops [?]: N/A Average number of free bases in bulge loops [?]: N/A Minimum number of free bases in bulge loop [?]: N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features Total number of non-canonical base pairs [?]: 0

Pseudoknot features

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia