RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00497 NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1JWC 16 PDB_00522 CRYSTAL STRUCTURE OF AN RNA TERTIARY DOMAIN ESSENTIAL TO HCV IRES-MEDIATED TRANSLATION INITIATION. Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KH6 48 PDB_00526 RNA APTAMER COMPLEXED WITH ARGININE, NMR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KOC 25 PDB_00527 RNA APTAMER COMPLEXED WITH CITRULLINE, NMR Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1KOD 25 PDB_00537 STRUCTURE OF THE LICT BACTERIAL ANTITERMINATOR PROTEIN IN COMPLEX WITH ITS RNA TARGET Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1L1C 29 PDB_00542 CRYSTAL STRUCTURE OF SRP19 IN COMPLEX WITH THE S DOMAIN OF SIGNAL RECOGNITION PARTICLE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1L9A 126 PDB_00557 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5O 226 PDB_00558 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5P 226 PDB_00559 TRANSITION STATE STABILIZATION BY A CATALYTIC RNA Synthetic RNA HOMO SAPIENS RCSB Protein Data Bank 1M5V 226 PDB_00574 BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1MNB 28

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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