RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

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General features for molecule NDB_00001
(click to expand/contract all tables)

Format:
Molecule ID [?]:NDB_00001
Molecule name [?]:NDB id adh012
Source [?]:Nucleic Acid Database
Source ID [?]:adh012
Reference [?]:T.E.Haran, Z.Shakked, A.H.-J.Wang, A.Rich. The Crystal Structure of d(CCCCGGGG): A New A-Form Variant with an Extended Backbone Conformation. J.Biomol.Struct.Dyn. V. 5 199 1987 ASTM JBSDD6 US ISSN 0739-1102 0646
Type [?]:Unknown

[?]     PS figure     PDF figure
Figure from original source
Organism [?]:N/A
Validated by NMR or X-Ray [?]:Yes
Method for secondary structure determination [?]:X-Ray; ran through RNAview
Number of molecules [?]:2
Length [?]:16
Fragments used [?]:No
Duplicated sequence [?]:Molecules in the database with the same sequence: PDB_00212, PDB_00235, PDB_00916
Number of domains [?]:1
Number of unpaired bases [?]:0
Number of paired bases [?]:16

Click on any header below for additional features.

Stem features

Number of stems [?]:1
Number of base pairs in stems [?]:8
Maximum length of a stem [?]:8
Average length of a stem [?]:8
Minimum length of a stem [?]:8
Maximum estimated free energy [?]:-22.2
Average estimated free energy [?]:-22.2
Minimum estimated free energy [?]:-22.2

Hairpin loop features

Number of hairpin loops [?]:1
Maximum number of free bases in hairpin loops [?]:0
Average number of free bases in hairpin loops [?]:0
Minimum number of free bases in hairpin loop [?]:0

Bulge loop features
Number of bulge loops [?]:0
Maximum number of free bases in bulge loops [?]:N/A
Average number of free bases in bulge loops [?]:N/A
Minimum number of free bases in bulge loop [?]:N/A

Internal loop features

Multi-loop features

Non-canonical base pairs features
Total number of non-canonical base pairs [?]: 0

Pseudoknot features



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