RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00588 LAMBDA3 ELONGATION COMPLEX WITH FOUR PHOSPHODIESTER BOND FORMED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N35 16 PDB_00590 REOVIRUS POLYMERASE LAMBDA3 ELONGATION COMPLEX WITH ONE PHOSPHODIESTER BOND FORMED Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1N38 10 PDB_00598 SOLUTION STRUCTURE OF AN RNA 2'-O-METHYLATED RNA DUPLEX CONTAINING AN RNA/DNA HYBRID SEGMENT AT THE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NAO 18 PDB_00599 THE STRUCTURE OF RNA APTAMER FOR HIV TAT COMPLEXED WITH TWO ARGININAMIDE MOLECULES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NBK 34 PDB_00603 SACCHARIDE-RNA RECOGNITION IN THE NEOMYCIN B / RNA APTAMER COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NEM 23 PDB_00611 2.9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NTA 40 PDB_00612 2.9 A CRYSTAL STRUCTURE OF STREPTOMYCIN RNA-APTAMER COMPLEX Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1NTB 40 PDB_00629 CRYSTAL STRUCTURE OF NF-KB(P50)2 COMPLEXED TO A HIGH- AFFINITY RNA APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1OOA 58 PDB_00639 STRUCTURE OF RIBONUCLEIC ACID, NMR, 1 STRUCTURE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1PBL 12 PDB_00655 SOLUTION STRUCTURE OF THE MALACHITE GREEN RNA BINDING APTAMER Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1Q8N 38

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

For questions, comments, suggestions and bug reports, please contact:

Copyright © 2004-2008 BETA LAB - University of British Columbia