RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Synthetic RNA Organism: Any Source: Any , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 450 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] PDB_00709 CRYSTAL STRUCTURE OF THE RNA OCTAMER GGCGAGCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SA9 40 PDB_00710 CRYSTAL STRUCTURE OF THE RNA OCTAMER GIC(GA)GCC Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SAQ 40 PDB_00721 SOLUTION STRUCTURE OF THE S. CEREVISIAE U6 INTRAMOLECULAR STEM LOOP (ISL) RNA AT PH 5.7 Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1SYZ 24 PDB_00724 CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1T0D 66 PDB_00725 CRYSTAL STRUCTURE OF 2-AMINOPURINE LABELLED BACTERIAL DECODING SITE RNA Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1T0E 35 PDB_00728 SOLUTION STRUCTURE OF DOUBLE-STRANDED RNA BINDING DOMAIN OF S. CEREVISIAE RNASE III (RNT1P) IN COMPL Synthetic RNA SACCHAROMYCES CEREVISIAE RCSB Protein Data Bank 1T4L 32 PDB_00729 THE FIRST LEFT-HANDED RNA STRUCTURE OF (CGCGCG)2, Z-RNA, NMR, 12 STRUCTURES, DETERMINED IN HIGH SALT Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1T4X 12 PDB_00737 SACCHARIDE-RNA RECOGNITION IN AN AMINOGLYCOSIDE ANTIBIOTIC- RNA APTAMER COMPLEX, NMR, 7 STRUCTURES Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1TOB 27 PDB_00748 NMR STRUCTURE OF THE MLV ENCAPSIDATION SIGNAL BOUND TO THE NUCLEOCAPSID PROTEIN Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U6P 101 PDB_00749 GUANINE RIBOSWITCH BOUND TO HYPOXANTHINE Synthetic RNA SYNTHETIC RCSB Protein Data Bank 1U8D 67

Analyse the 450 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 450 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 450 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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