RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database

Search Criteria (click here to expand/contract) General features Type: Any Organism: Any Source: Nucleic Acid Database , Source ID: Any Length: Any Validated by NMR or X-Ray: I don't care Number of molecules in complex: Any Fragment: I don't care Duplicates: All molecules Sequence pattern: Any Abstract shape: Any

Search results: 53 results found. (Click on the row to see the statistics for the chosen molecule.) RNA STRAND ID [?] Molecule name [?] Type [?] Organism [?] Source [?] Source ID [?] Length [?] NDB_00011 NDB id arb004 Unknown Unknown Nucleic Acid Database arb004 4 NDB_00012 NDB id arb005 Unknown Unknown Nucleic Acid Database arb005 4 NDB_00013 MOLECULAR STRUCTURE OF DEOXYCYTIDYL-3'-METHYLPHOSPHONATE (RP) 5'-DEOXYGUANIDINE, D[CP(CH3)G]. A NEUT Synthetic RNA SYNTHETIC Nucleic Acid Database bdbp23 4 NDB_00014 DETERMINANTS OF REPRESSOR/OPERATOR RECOGNITION FROM THE STRUCTURE OF THE TRP OPERATOR BINDING SITE Synthetic RNA SYNTHETIC Nucleic Acid Database bdj061 20 NDB_00015 UNUSUAL HELICAL PACKING IN CRYSTALS OF DNA BEARING A MUTATION HOT SPOT Unknown Unknown Nucleic Acid Database bdl018 24 NDB_00016 MOLECULAR STRUCTURE OF NICKED DNA. MODEL A4 Synthetic RNA SYNTHETIC Nucleic Acid Database bdl021 24 NDB_00019 VISUALIZATION OF DRUG NUCLEIC ACID INTERACTIONS AT ATOMIC RESOLUTION: X. STRUCTURE OF A N,N-DIMETHYL Synthetic RNA SYNTHETIC Nucleic Acid Database ddb008 4 NDB_00020 THE STRUCTURE OF A DRUG-DEOXYDINUCLEOSIDE PHOSPHATE COMPLEX; GENERALIZED CONFORMATIONAL BEHAVIOR OF Synthetic RNA SYNTHETIC Nucleic Acid Database ddb009 4 NDB_00023 LOW TEMPERATURE STRUCTURES OF DCPG-PROFLAVINE: CONFORMATIONAL AND HYDRATION EFFECTS Synthetic RNA SYNTHETIC Nucleic Acid Database ddb033 4 NDB_00024 LOW TEMPERATURE STRUCTURES OF DCPG-PROFLAVINE: CONFORMATIONAL AND HYDRATION EFFECTS Synthetic RNA SYNTHETIC Nucleic Acid Database ddb034 4

Analyse the 53 results of your search Per molecule: Molecule length Number of stems Number of hairpin loops Number of bulges Number of internal loops Number of multi-loops Number of pseudoknots Number of bands Number of domains # base pairs to break for pseudoknot freeness # bands to break for pseudoknot freeness Average stem length Average hairpin size Average bulge size Average internal loop size Average multi-loop size Cumulative distribution Histograms Correlation vs. molecule length In all 53 molecules: Stem length Stem free energy (estimated) Hairpin number of free bases Bulge number of free bases Internal loop number of free bases Internal loop absolute asymmetry Multi-loop number of free bases Multi-loop average absolute asymmetry Multi-loop number of branches Exterior loop number of free bases Pseudoknot number of bands Pseudoknot - min # of base pairs to break Pseudoknot - min # of bands to break Pseudoknot length Number of non-canonical base pairs and nearest neighbours Cumulative distribution Histograms (Cummulative distributions are not applicable to non-canonical base pairs) Remove outliers (not applicable to correlations and non-canonical base pairs) [?] Normalize by RNA type (not applicable to non-canonical base pairs) [?]

Download all 53 results of your search Format [?]: CT (one file per entry) RNAML (one file per entry) BPSEQ (one file per entry) Dot-parentheses (one file per entry) Dot-parentheses (one file for all entries) FASTA (one file per entry) FASTA (one file for all entries)

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